Nisaea denitrificans
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Thalassobaculales; f__Nisaeaceae; g__Nisaea; s__Nisaea denitrificans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodospirillales; f__Rhodospirillaceae; g__Nisaea; s__Nisaea denitrificans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodospirillales; f__Rhodospirillaceae; g__Nisaea; s__Nisaea denitrificans; x__Nisaea denitrificans DSM 18348
NCBI Strain Identifiers DSM 18348
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.87%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 1
tRNA Count 19
Contig Count 22
N50 Contigs 550,725 bp
Longest Contig 2,011,020 bp
Scaffold Count 20
N50 Scaffolds 612,160 bp
Longest Scaffold 2,011,020 bp
Genome Size 4,626,718 bp
Protein Count 4,265
Coding Density 90.99%
GC Percentage 60.54%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42650v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441524
Country Mediterranean Sea
Date 2013-07-11
Genbank Assembly Accession GCA_000426505.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,255
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 2
Species Taxid 390877
SSU Count 4
Submitter DOE Joint Genome Institute
Taxid 1122607
Total Gap Length 2719
Translation Table 11
tRNA Count (total) 45
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUFM00000000.1