Bradyrhizobium neotropicale
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Xanthobacteraceae; g__Bradyrhizobium; s__Bradyrhizobium neotropicale
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Bradyrhizobium; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Bradyrhizobiaceae; g__Bradyrhizobium; s__Bradyrhizobium sp. Cp5.3
NCBI Strain Identifiers Cp5.3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001641695.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.3%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 150
N50 Contigs 218,972 bp
Longest Contig 666,645 bp
Scaffold Count 148
N50 Scaffolds 218,972 bp
Longest Scaffold 666,645 bp
Genome Size 8,918,781 bp
Protein Count 8,468
Coding Density 84.85%
GC Percentage 63.41%
Ambiguous Bases N/A
GTDB representative GCA_001641695.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42626v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441187
Country Panama
Date 2013-07-11
Genbank Assembly Accession GCA_000426265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 9.1727 N 79.8568 E
Molecule Count N/A
CDS Count 8,440
Refseq Category na
Seq Rel Date 2013/07/11
Spanned Gaps 2
Species Taxid 443598
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 443598
Total Gap Length 2795
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AUFA00000000.1