Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E parafulva
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas parafulva
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas parafulva; x__Pseudomonas parafulva NBRC 16636 = DSM 17004
NCBI Strain Identifiers DSM 17004
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_000730645.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.13%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 0
23S Count 0
tRNA Count 19
Contig Count 40
N50 Contigs 251,120 bp
Longest Contig 405,206 bp
Scaffold Count 32
N50 Scaffolds 295,916 bp
Longest Scaffold 990,909 bp
Genome Size 4,956,622 bp
Protein Count 4,472
Coding Density 89.98%
GC Percentage 62.49%
Ambiguous Bases N/A
GTDB representative GCA_000730645.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42576v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441530
Country Japan
Date 2013-07-11
Genbank Assembly Accession GCA_000425765.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,471
Refseq Category na
Seq Rel Date 2013/07/11
Spanned Gaps 8
Species Taxid 157782
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1215114
Total Gap Length 5642
Translation Table 11
tRNA Count (total) 55
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUEB00000000.1