Psychroserpens burtonensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales; f__Flavobacteriaceae; g__Psychroserpens; s__Psychroserpens burtonensis
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Psychroserpens; s__Psychroserpens burtonensis
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Psychroserpens; s__Psychroserpens burtonensis; x__Psychroserpens burtonensis DSM 12212
NCBI Strain Identifiers DSM 12212
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 1.87%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 73
N50 Contigs 163,996 bp
Longest Contig 349,214 bp
Scaffold Count 68
N50 Scaffolds 164,084 bp
Longest Scaffold 349,214 bp
Genome Size 3,976,448 bp
Protein Count 3,613
Coding Density 87.92%
GC Percentage 33.41%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42530v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440859
Country Antarctica
Date 2013-07-11
Genbank Assembly Accession GCA_000425305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 68.6332 S 78.1000 E
Molecule Count N/A
CDS Count 3,504
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 5
Species Taxid 49278
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1123037
Total Gap Length 4962
Translation Table 11
tRNA Count (total) 35
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUDE00000000.1