Streptococcus castoreus
Isolate HQ 5S/16S/23S 14 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus castoreus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus castoreus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus castoreus; x__Streptococcus castoreus DSM 17536
NCBI Strain Identifiers DSM 17536
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 14
Contig Count 46
N50 Contigs 80,987 bp
Longest Contig 182,668 bp
Scaffold Count 42
N50 Scaffolds 80,987 bp
Longest Scaffold 212,461 bp
Genome Size 1,883,536 bp
Protein Count 1,824
Coding Density 84.95%
GC Percentage 37.81%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42502v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441486
Country United Kingdom
Date 2013-07-11
Genbank Assembly Accession GCA_000425025.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,805
Refseq Category na
Seq Rel Date 2013/07/11
Spanned Gaps 4
Species Taxid 254786
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1123299
Total Gap Length 1884
Translation Table 11
tRNA Count (total) 24
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUKZ00000000.1