Pseudobutyrivibrio ruminis_B
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Lachnospirales; f__Lachnospiraceae; g__Pseudobutyrivibrio; s__Pseudobutyrivibrio ruminis_B
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Pseudobutyrivibrio; s__Pseudobutyrivibrio ruminis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__Pseudobutyrivibrio; s__Pseudobutyrivibrio ruminis; x__Pseudobutyrivibrio ruminis AD2017
NCBI Strain Identifiers AD2017
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.52%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 22
N50 Contigs 376,338 bp
Longest Contig 678,684 bp
Scaffold Count 21
N50 Scaffolds 376,338 bp
Longest Scaffold 688,393 bp
Genome Size 2,912,101 bp
Protein Count 2,575
Coding Density 91.40%
GC Percentage 38.48%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42430v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441495
Country None
Date 2013-07-11
Genbank Assembly Accession GCA_000424305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,559
Refseq Category na
Seq Rel Date 2013/07/11
Spanned Gaps 1
Species Taxid 46206
SSU Count 6
Submitter DOE Joint Genome Institute
Taxid 1280694
Total Gap Length 314
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AUJQ00000000.1