Clostridium butyricum
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium butyricum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium butyricum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium butyricum; x__Clostridium butyricum AGR2140
NCBI Strain Identifiers AGR2140
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_006742065.1)
Genome Characteristics
CheckM Completeness 99.19%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 3
23S Count 5
tRNA Count 18
Contig Count 42
N50 Contigs 237,318 bp
Longest Contig 422,170 bp
Scaffold Count 39
N50 Scaffolds 237,318 bp
Longest Scaffold 422,170 bp
Genome Size 4,550,822 bp
Protein Count 4,100
Coding Density 85.30%
GC Percentage 28.51%
Ambiguous Bases N/A
GTDB representative GCA_006742065.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42424v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441161
Country None
Date 2013-07-11
Genbank Assembly Accession GCA_000424245.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,019
Refseq Category na
Seq Rel Date 2013/07/11
Spanned Gaps 3
Species Taxid 1492
SSU Count 8
Submitter DOE Joint Genome Institute
Taxid 1280693
Total Gap Length 875
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AUJN00000000.1