Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Cytophagales; f__Spirosomaceae; g__Runella; s__Runella zeae
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Cytophagaceae; g__Runella; s__Runella zeae
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Cytophagia; o__Cytophagales; f__Cytophagaceae; g__Runella; s__Runella zeae; x__Runella zeae DSM 19591
NCBI Strain Identifiers DSM 19591
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 1
tRNA Count 19
Contig Count 109
N50 Contigs 155,998 bp
Longest Contig 540,971 bp
Scaffold Count 85
N50 Scaffolds 216,479 bp
Longest Scaffold 546,582 bp
Genome Size 7,600,634 bp
Protein Count 6,421
Coding Density 89.60%
GC Percentage 42.14%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42356v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441156
Country USA
Date 2013-07-11
Genbank Assembly Accession GCA_000423565.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,338
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 24
Species Taxid 94255
SSU Count 3
Submitter DOE Joint Genome Institute
Taxid 1123078
Total Gap Length 17990
Translation Table 11
tRNA Count (total) 38
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUIF00000000.1