Propionicicella superfundia
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinobacteria; o__Propionibacteriales; f__Propionibacteriaceae; g__Propionicicella; s__Propionicicella superfundia
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Propionibacteriales; f__Nocardioidaceae; g__Propionicicella; s__Propionicicella superfundia
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Propionibacteriales; f__Nocardioidaceae; g__Propionicicella; s__Propionicicella superfundia; x__Propionicicella superfundia DSM 22317
NCBI Strain Identifiers DSM 22317
GTDB Type Material Designation type strain of species
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 97.24%
CheckM Contamination 0.52%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 36
N50 Contigs 189,247 bp
Longest Contig 597,086 bp
Scaffold Count 23
N50 Scaffolds 799,902 bp
Longest Scaffold 1,024,756 bp
Genome Size 3,623,963 bp
Protein Count 3,318
Coding Density 89.84%
GC Percentage 70.00%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42346v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440659
Country USA
Date 2013-7-11
Genbank Assembly Accession GCA_000423465.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 30.5783 N 91.2258 W
Molecule Count 0
Protein Count 3,244
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 13
Species Taxid 348582
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1122999
Total Gap Length 6495
Translation Table 11
tRNA Count (total) 45
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUIA00000000.1