Idiomarina sediminum
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Alteromonadaceae; g__Idiomarina; s__Idiomarina sediminum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Idiomarinaceae; g__Idiomarina; s__Idiomarina sediminum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Idiomarinaceae; g__Idiomarina; s__Idiomarina sediminum; x__Idiomarina sediminum DSM 21906
NCBI Strain Identifiers DSM 21906
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.32%
CheckM Contamination 0.17%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 14
N50 Contigs 379,876 bp
Longest Contig 663,064 bp
Scaffold Count 10
N50 Scaffolds 1,455,439 bp
Longest Scaffold 1,455,439 bp
Genome Size 2,624,474 bp
Protein Count 2,406
Coding Density 93.58%
GC Percentage 50.36%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42316v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440836
Country China
Date 2013-07-11
Genbank Assembly Accession GCA_000423165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,414
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 4
Species Taxid 431675
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1122124
Total Gap Length 255
Translation Table 11
tRNA Count (total) 51
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUHL00000000.1