Porphyrobacter cryptus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Porphyrobacter; s__Porphyrobacter cryptus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Erythrobacteraceae; g__Porphyrobacter; s__Porphyrobacter cryptus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Erythrobacteraceae; g__Porphyrobacter; s__Porphyrobacter cryptus; x__Porphyrobacter cryptus DSM 12079
NCBI Strain Identifiers DSM 12079
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.48%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 36
N50 Contigs 268,322 bp
Longest Contig 587,004 bp
Scaffold Count 34
N50 Scaffolds 268,322 bp
Longest Scaffold 587,004 bp
Genome Size 2,954,426 bp
Protein Count 2,848
Coding Density 92.38%
GC Percentage 67.85%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42298v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440655
Country Portugal
Date 2013-07-11
Genbank Assembly Accession GCA_000422985.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 40.600 N 7.863 W
Molecule Count N/A
CDS Count 2,810
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 2
Species Taxid 196588
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1122970
Total Gap Length 3650
Translation Table 11
tRNA Count (total) 44
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUHC00000000.1