Pleomorphomonas oryzae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Pleomorphomonadaceae; g__Pleomorphomonas; s__Pleomorphomonas oryzae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Methylocystaceae; g__Pleomorphomonas; s__Pleomorphomonas oryzae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Methylocystaceae; g__Pleomorphomonas; s__Pleomorphomonas oryzae; x__Pleomorphomonas oryzae DSM 16300
NCBI Strain Identifiers DSM 16300
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 1.4%
CheckM Strain Heterogeneity 16.67
5S Count 1
16S Count 3
23S Count 2
tRNA Count 19
Contig Count 39
N50 Contigs 356,878 bp
Longest Contig 652,348 bp
Scaffold Count 37
N50 Scaffolds 356,878 bp
Longest Scaffold 652,348 bp
Genome Size 5,230,452 bp
Protein Count 4,850
Coding Density 87.64%
GC Percentage 63.00%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42296v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440654
Country Japan
Date 2013-07-11
Genbank Assembly Accession GCA_000422965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,802
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 2
Species Taxid 261934
SSU Count 4
Submitter DOE Joint Genome Institute
Taxid 1122963
Total Gap Length 540
Translation Table 11
tRNA Count (total) 44
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUHB00000000.1