Pseudovibrio exalbescens
Isolate HQ 5S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Stappiaceae; g__Pseudovibrio; s__Pseudovibrio exalbescens
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Nesiotobacter; s__Nesiotobacter exalbescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Nesiotobacter; s__Nesiotobacter exalbescens; x__Nesiotobacter exalbescens DSM 16456
NCBI Strain Identifiers DSM 16456
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.37%
CheckM Contamination 0.03%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 0
23S Count 1
tRNA Count 19
Contig Count 41
N50 Contigs 293,703 bp
Longest Contig 531,082 bp
Scaffold Count 36
N50 Scaffolds 389,450 bp
Longest Scaffold 531,082 bp
Genome Size 4,157,019 bp
Protein Count 3,772
Coding Density 87.97%
GC Percentage 55.08%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42278v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441518
Country USA
Date 2013-07-11
Genbank Assembly Accession GCA_000422785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 25.767354 N 171.73331 W
Molecule Count N/A
CDS Count 3,709
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 5
Species Taxid 197461
SSU Count 0
Submitter DOE Joint Genome Institute
Taxid 1122601
Total Gap Length 5980
Translation Table 11
tRNA Count (total) 54
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUGS00000000.1