Flavobacterium subsaxonicum
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium subsaxonicum
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium subsaxonicum
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Flavobacteriia; o__Flavobacteriales; f__Flavobacteriaceae; g__Flavobacterium; s__Flavobacterium subsaxonicum; x__Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790
NCBI Strain Identifiers DSM 21790
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.65%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 1
tRNA Count 19
Contig Count 31
N50 Contigs 303,151 bp
Longest Contig 833,628 bp
Scaffold Count 19
N50 Scaffolds 366,192 bp
Longest Scaffold 1,376,805 bp
Genome Size 4,638,566 bp
Protein Count 4,069
Coding Density 89.05%
GC Percentage 41.62%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42272v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441179
Country Germany
Date 2013-07-11
Genbank Assembly Accession GCA_000422725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,023
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 12
Species Taxid 426226
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1121898
Total Gap Length 8619
Translation Table 11
tRNA Count (total) 41
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AUGP00000000.1