Paenibacillus_O pasadenensis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Paenibacillales; f__Paenibacillaceae; g__Paenibacillus_O; s__Paenibacillus_O pasadenensis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Paenibacillaceae; g__Paenibacillus; s__Paenibacillus pasadenensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Paenibacillaceae; g__Paenibacillus; s__Paenibacillus pasadenensis; x__Paenibacillus pasadenensis DSM 19293
NCBI Strain Identifiers DSM 19293
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 4
23S Count 1
tRNA Count 19
Contig Count 85
N50 Contigs 125,472 bp
Longest Contig 562,085 bp
Scaffold Count 49
N50 Scaffolds 260,617 bp
Longest Scaffold 562,085 bp
Genome Size 5,714,182 bp
Protein Count 4,868
Coding Density 86.59%
GC Percentage 63.27%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42248v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440802
Country None
Date 2013-07-11
Genbank Assembly Accession GCA_000422485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 34.202 N 118.172 W
Molecule Count N/A
CDS Count 4,855
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 36
Species Taxid 217090
SSU Count 7
Submitter DOE Joint Genome Institute
Taxid 1122923
Total Gap Length 17491
Translation Table 11
tRNA Count (total) 71
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AULW00000000.1