Paenibacillus_B assamensis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Paenibacillales; f__Paenibacillaceae; g__Paenibacillus_B; s__Paenibacillus_B assamensis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Paenibacillaceae; g__Paenibacillus; s__Paenibacillus assamensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Paenibacillaceae; g__Paenibacillus; s__Paenibacillus assamensis; x__Paenibacillus assamensis DSM 18201
NCBI Strain Identifiers DSM 18201
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.73%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 2
23S Count 1
tRNA Count 19
Contig Count 37
N50 Contigs 312,996 bp
Longest Contig 877,879 bp
Scaffold Count 32
N50 Scaffolds 375,261 bp
Longest Scaffold 878,728 bp
Genome Size 5,027,965 bp
Protein Count 4,418
Coding Density 85.21%
GC Percentage 43.28%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42244v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441144
Country India
Date 2013-07-11
Genbank Assembly Accession GCA_000422445.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,358
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 5
Species Taxid 311244
SSU Count 7
Submitter DOE Joint Genome Institute
Taxid 1122916
Total Gap Length 5686
Translation Table 11
tRNA Count (total) 67
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AULU00000000.1