Spongiibacter marinus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter marinus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter marinus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter marinus; x__Spongiibacter marinus DSM 19753
NCBI Strain Identifiers DSM 19753
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 23
N50 Contigs 265,760 bp
Longest Contig 696,201 bp
Scaffold Count 21
N50 Scaffolds 265,760 bp
Longest Scaffold 696,201 bp
Genome Size 3,435,542 bp
Protein Count 3,215
Coding Density 91.72%
GC Percentage 55.14%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42234v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440685
Country Mediterranean Sea
Date 2013-07-11
Genbank Assembly Accession GCA_000422345.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,179
Refseq Category representative genome
Seq Rel Date 2013/07/11
Spanned Gaps 2
Species Taxid 354246
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1122224
Total Gap Length 1331
Translation Table 11
tRNA Count (total) 41
Type Material assembly from synonym type material
Unspanned Gaps 0
Version Status latest
WGS Master AULP00000000.1