Iso899 sp000421445
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Jatrophihabitantaceae; g__Iso899; s__Iso899 sp000421445
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Frankiales; f__Frankiaceae; g__Frankia; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Frankiales; f__Frankiaceae; g__Frankia; s__Frankia sp. Iso899
NCBI Strain Identifiers Iso899
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 96.38%
CheckM Contamination 2.57%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 67
N50 Contigs 249,516 bp
Longest Contig 1,019,625 bp
Scaffold Count 67
N50 Scaffolds 249,516 bp
Longest Scaffold 1,019,625 bp
Genome Size 5,104,726 bp
Protein Count 4,952
Coding Density 89.89%
GC Percentage 63.39%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM42144v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441579
Country None
Date 2013-07-09
Genbank Assembly Accession GCA_000421445.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,858
Refseq Category na
Seq Rel Date 2013/07/09
Spanned Gaps 0
Species Taxid 1283283
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1283283
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATXA00000000.1