Arenimonas oryziterrae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Arenimonas; s__Arenimonas oryziterrae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Arenimonas; s__Arenimonas oryziterrae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Arenimonas; s__Arenimonas oryziterrae; x__Arenimonas oryziterrae DSM 21050 = YC6267
NCBI Strain Identifiers DSM 21050
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (2 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 25
N50 Contigs 764,856 bp
Longest Contig 968,548 bp
Scaffold Count 25
N50 Scaffolds 764,856 bp
Longest Scaffold 968,548 bp
Genome Size 3,091,755 bp
Protein Count 2,880
Coding Density 92.29%
GC Percentage 65.65%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM42054v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02441585
Country South Korea
Date 2013-07-09
Genbank Assembly Accession GCA_000420545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 35.181666 N 128.107953 E
Molecule Count N/A
CDS Count 2,869
Refseq Category representative genome
Seq Rel Date 2013/07/09
Spanned Gaps 0
Species Taxid 498055
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 1121015
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ATVD00000000.1