Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Desulfurellia; o__Desulfurellales; f__Hippeaceae; g__Hippea; s__Hippea alviniae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Deltaproteobacteria; o__Desulfurellales; f__Desulfurellaceae; g__Hippea; s__Hippea alviniae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Deltaproteobacteria; o__Desulfurellales; f__Desulfurellaceae; g__Hippea; s__Hippea alviniae; x__Hippea alviniae EP5-r
NCBI Strain Identifiers EP5-r
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.77%
CheckM Contamination 0.41%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 4
N50 Contigs 1,281,273 bp
Longest Contig 1,281,273 bp
Scaffold Count 4
N50 Scaffolds 1,281,273 bp
Longest Scaffold 1,281,273 bp
Genome Size 1,749,386 bp
Protein Count 1,767
Coding Density 94.72%
GC Percentage 37.03%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM42038v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440906
Country None
Date 2013-07-09
Genbank Assembly Accession GCA_000420385.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,749
Refseq Category representative genome
Seq Rel Date 2013/07/09
Spanned Gaps 0
Species Taxid 1279027
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 944480
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ATUV00000000.1