Spongiibacter tropicus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter tropicus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter tropicus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter tropicus; x__Spongiibacter tropicus DSM 19543
NCBI Strain Identifiers DSM 19543
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (8 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.2%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 8
N50 Contigs 2,168,856 bp
Longest Contig 2,168,856 bp
Scaffold Count 7
N50 Scaffolds 2,483,318 bp
Longest Scaffold 2,483,318 bp
Genome Size 3,947,342 bp
Protein Count 3,694
Coding Density 92.01%
GC Percentage 57.28%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM42032v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02440570
Country Pacific Ocean
Date 2013-07-09
Genbank Assembly Accession GCA_000420325.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,663
Refseq Category representative genome
Seq Rel Date 2013/07/09
Spanned Gaps 1
Species Taxid 454602
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1123279
Total Gap Length 10
Translation Table 11
tRNA Count (total) 40
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ATUS00000000.1