Streptococcus agalactiae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Streptococcaceae; g__Streptococcus; s__Streptococcus agalactiae; x__Streptococcus agalactiae MC623
NCBI Strain Identifiers MC623
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000186445.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 3
tRNA Count 19
Contig Count 41
N50 Contigs 110,818 bp
Longest Contig 402,133 bp
Scaffold Count 36
N50 Scaffolds 132,612 bp
Longest Scaffold 521,946 bp
Genome Size 2,037,039 bp
Protein Count 2,022
Coding Density 89.22%
GC Percentage 35.15%
Ambiguous Bases N/A
GTDB representative GCA_000186445.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name S_agalactiaeMC623-1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436898
Country USA: MO
Date 2013-7-8
Genbank Assembly Accession GCA_000419175.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source blood sample of individual with bacteremia
Latitude Longitude None
Molecule Count N/A
CDS Count 2,060
Refseq Category na
Seq Rel Date 2013/07/08
Spanned Gaps 5
Species Taxid 1311
SSU Count 2
Submitter The Genome Institute
Taxid 1333568
Total Gap Length 500
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATOX00000000.1