Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli AB42602061-isolate1
NCBI Strain Identifiers AB42602061-isolate1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.47%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 196
N50 Contigs 92,626 bp
Longest Contig 433,295 bp
Scaffold Count 126
N50 Scaffolds 207,904 bp
Longest Scaffold 572,818 bp
Genome Size 5,030,886 bp
Protein Count 4,704
Coding Density 87.65%
GC Percentage 50.58%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name E_coliAB42602061-isolate1-1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436902
Country USA: MO
Date 2013-07-08
Genbank Assembly Accession GCA_000418715.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample of individual with bacteremia
Latitude Longitude None
Molecule Count N/A
CDS Count 4,884
Refseq Category na
Seq Rel Date 2013/07/08
Spanned Gaps 70
Species Taxid 562
SSU Count 3
Submitter The Genome Institute
Taxid 1333591
Total Gap Length 7000
Translation Table 11
tRNA Count (total) 64
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATOB00000000.1