Staphylococcus epidermidis
Isolate HQ 16S/23S 15 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis; x__Staphylococcus epidermidis MC28
NCBI Strain Identifiers MC28
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_006742205.1)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.77%
CheckM Strain Heterogeneity 50.0
5S Count 0
16S Count 1
23S Count 3
tRNA Count 15
Contig Count 381
N50 Contigs 21,099 bp
Longest Contig 61,811 bp
Scaffold Count 381
N50 Scaffolds 21,099 bp
Longest Scaffold 61,811 bp
Genome Size 2,559,207 bp
Protein Count 2,570
Coding Density 83.31%
GC Percentage 31.84%
Ambiguous Bases N/A
GTDB representative GCA_006742205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name MC28_v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470526
Country Germany: Ploen
Date 2013-11-26
Genbank Assembly Accession GCA_000418005.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source skin
Latitude Longitude None
Molecule Count N/A
CDS Count 2,644
Refseq Category na
Seq Rel Date 2013/11/26
Spanned Gaps 0
Species Taxid 1282
SSU Count 1
Submitter Max-Planck-Institute for Evolutionary Biology
Taxid 1344995
Total Gap Length 0
Translation Table 11
tRNA Count (total) 34
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATCZ00000000.2