Undefined name (Failed Quality Check)
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae group pathovars incertae sedis; x__Pseudomonas syringae pv. actinidiae; x__Pseudomonas syringae pv. actinidiae ICMP 18886
NCBI Strain Identifiers ICMP 18886
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 95.78%
CheckM Contamination 2.32%
CheckM Strain Heterogeneity 35.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 1,765
N50 Contigs 6,616 bp
Longest Contig 53,135 bp
Scaffold Count 1,755
N50 Scaffolds 6,630 bp
Longest Scaffold 53,135 bp
Genome Size 6,034,474 bp
Protein Count 6,893
Coding Density 86.77%
GC Percentage 58.37%
Ambiguous Bases 465
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM41692v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470798
Country None
Date 2013-07-01
Genbank Assembly Accession GCA_000416925.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,848
Refseq Category na
Seq Rel Date 2013/07/01
Spanned Gaps 10
Species Taxid 317
SSU Count 1
Submitter Plant & Food Research
Taxid 1189623
Total Gap Length 252
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOJT00000000.1