Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae group pathovars incertae sedis; x__Pseudomonas syringae pv. actinidiae; x__Pseudomonas syringae pv. actinidiae ICMP 18883
NCBI Strain Identifiers ICMP 18883
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.67%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 419
N50 Contigs 34,879 bp
Longest Contig 147,278 bp
Scaffold Count 415
N50 Scaffolds 34,879 bp
Longest Scaffold 147,278 bp
Genome Size 6,309,762 bp
Protein Count 5,781
Coding Density 87.84%
GC Percentage 58.65%
Ambiguous Bases 232
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM41678v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470791
Country None
Date 2013-7-1
Genbank Assembly Accession GCA_000416785.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,986
Refseq Category na
Seq Rel Date 2013/07/01
Spanned Gaps 4
Species Taxid 317
SSU Count 1
Submitter The New Zealand Institute for Plant & Food Research Limited
Taxid 1194402
Total Gap Length 94
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOKH00000000.1