Lactobacillus_G otakiensis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus_G; s__Lactobacillus_G otakiensis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus otakiensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus otakiensis; x__Lactobacillus otakiensis DSM 19908 = JCM 15040
NCBI Strain Identifiers JCM 15040
GTDB Type Material Designation type strain of species
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.06%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 40
N50 Contigs 244,550 bp
Longest Contig 617,647 bp
Scaffold Count 40
N50 Scaffolds 244,550 bp
Longest Scaffold 617,647 bp
Genome Size 2,347,132 bp
Protein Count 2,276
Coding Density 87.38%
GC Percentage 42.39%
Ambiguous Bases 0
GTDB representative GCF_001434145.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Lot_1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00036749
Country None
Date 2013-6-25
Genbank Assembly Accession GCA_000415925.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 2,251
Refseq Category na
Seq Rel Date 2013/06/25
Spanned Gaps 0
Species Taxid 481720
SSU Count 1
Submitter Institute of Genetic Resources, Faculty of Agriculture, Kyushu University
Taxid 1423780
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BASH00000000.1