Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli E2265
NCBI Strain Identifiers E2265
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.49%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 445
N50 Contigs 123,226 bp
Longest Contig 378,570 bp
Scaffold Count 410
N50 Scaffolds 123,226 bp
Longest Scaffold 378,570 bp
Genome Size 5,070,626 bp
Protein Count 5,075
Coding Density 87.61%
GC Percentage 50.43%
Ambiguous Bases 201
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name E2265_1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470023
Country Bangladesh: Dhaka
Date 2013-6-27
Genbank Assembly Accession GCA_000415485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool sample from patient
Latitude Longitude None
Molecule Count N/A
CDS Count 5,512
Refseq Category na
Seq Rel Date 2013/06/27
Spanned Gaps 217
Species Taxid 562
SSU Count 2
Submitter Institute of Microbiology, Chinese Academy of Sciences
Taxid 1331062
Total Gap Length 2824
Translation Table 11
tRNA Count (total) 102
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASRW00000000.1