Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Enteritidis; x__Salmonella enterica subsp. enterica serovar Enteritidis str. 08-1080
NCBI Strain Identifiers 08-1080
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 3
tRNA Count 14
Contig Count 187
N50 Contigs 59,696 bp
Longest Contig 191,801 bp
Scaffold Count 152
N50 Scaffolds 62,044 bp
Longest Scaffold 191,801 bp
Genome Size 4,647,561 bp
Protein Count 4,417
Coding Density 87.65%
GC Percentage 52.11%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM41476v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02415294
Country None
Date 2013-6-26
Genbank Assembly Accession GCA_000414765.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 4,695
Refseq Category na
Seq Rel Date 2013/06/26
Spanned Gaps 35
Species Taxid 28901
SSU Count 1
Submitter The Genome Institute
Taxid 1192585
Total Gap Length 700
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATFS00000000.1