Bifidobacterium vaginale
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium vaginale
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Gardnerella; s__Gardnerella vaginalis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Gardnerella; s__Gardnerella vaginalis; x__Gardnerella vaginalis JCP8108
NCBI Strain Identifiers JCP8108
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001042655.1)
Genome Characteristics
CheckM Completeness 98.11%
CheckM Contamination 0.95%
CheckM Strain Heterogeneity 25.0
5S Count 1
16S Count 2
23S Count 3
tRNA Count 19
Contig Count 176
N50 Contigs 30,383 bp
Longest Contig 97,626 bp
Scaffold Count 151
N50 Scaffolds 31,929 bp
Longest Scaffold 97,626 bp
Genome Size 1,665,594 bp
Protein Count 1,388
Coding Density 87.13%
GC Percentage 41.11%
Ambiguous Bases N/A
GTDB representative GCA_001042655.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM41452v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02436830
Country None
Date 2013-6-26
Genbank Assembly Accession GCA_000414525.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source vagina
Latitude Longitude None
Molecule Count N/A
CDS Count 1,434
Refseq Category na
Seq Rel Date 2013/06/26
Spanned Gaps 25
Species Taxid 2702
SSU Count 2
Submitter Washington University
Taxid 1261066
Total Gap Length 2500
Translation Table 11
tRNA Count (total) 43
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATJJ00000000.1