Treponema_C maltophilum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Spirochaetia; o__Treponematales; f__Treponemataceae; g__Treponema_C; s__Treponema_C maltophilum
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema maltophilum
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Treponema; s__Treponema maltophilum; x__Treponema maltophilum ATCC 51939
NCBI Strain Identifiers ATCC 51939
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 6
N50 Contigs 1,970,806 bp
Longest Contig 1,970,806 bp
Scaffold Count 1
N50 Scaffolds 2,530,388 bp
Longest Scaffold 2,530,388 bp
Genome Size 2,530,388 bp
Protein Count 2,288
Coding Density 91.97%
GC Percentage 47.88%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Trep_malt_ATCC_51939_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02596987
Country None
Date 2013-6-21
Genbank Assembly Accession GCA_000413055.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,297
Refseq Category representative genome
Seq Rel Date 2013/06/21
Spanned Gaps 5
Species Taxid 51160
SSU Count 2
Submitter Broad Institute
Taxid 1125699
Total Gap Length 3314
Translation Table 11
tRNA Count (total) 45
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master ATFF00000000.1