Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa; x__Pseudomonas aeruginosa str. MSH 10
NCBI Strain Identifiers MSH 10
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 97.72%
CheckM Contamination 1.06%
CheckM Strain Heterogeneity 37.5
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 943
N50 Contigs 34,532 bp
Longest Contig 110,269 bp
Scaffold Count 943
N50 Scaffolds 34,532 bp
Longest Scaffold 110,269 bp
Genome Size 6,346,940 bp
Protein Count 6,516
Coding Density 89.76%
GC Percentage 66.41%
Ambiguous Bases 1
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name MSH 10
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02142566
Country None
Date 2013-06-19
Genbank Assembly Accession GCA_000412435.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source mouth of Mount St. Helen
Latitude Longitude None
Molecule Count N/A
CDS Count 6,553
Refseq Category na
Seq Rel Date 2013/06/19
Spanned Gaps 0
Species Taxid 287
SSU Count 1
Submitter University of Strathclyde
Taxid 1333549
Total Gap Length 0
Translation Table 11
tRNA Count (total) 37
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASQX00000000.1