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GCF_000412035.1

Pasteurella multocida

Isolate

HQ

16S/23S

13 tRNAs

All Taxonomic Information Genome Characteristics NCBI Metadata Taxon History

Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida; x__Pasteurella multocida 2000
NCBI Strain Identifiers 2000
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Contamination 1.01%
CheckM Strain Heterogeneity 71.43
5S Count 0
16S Count 1
23S Count 3
tRNA Count 13
Contig Count 261
N50 Contigs 15,687 bp
Longest Contig 58,679 bp
Scaffold Count 261
N50 Scaffolds 15,687 bp
Longest Scaffold 58,679 bp
Genome Size 2,210,534 bp
Protein Count 2,184
Coding Density 90.14%
GC Percentage 40.25%
Ambiguous Bases 0
GTDB representative GCF_000754275.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM41203v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02470558
Country United Kingdom: Scotland
Date 2013-6-18
Genbank Assembly Accession GCA_000412035.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source lung
Latitude Longitude None
Molecule Count 0
Protein Count 2,138
Refseq Category na
Seq Rel Date 2013/06/18
Spanned Gaps 0
Species Taxid 747
SSU Count 1
Submitter Moredun Research Institute
Taxid 1298925
Total Gap Length 0
Translation Table 11
tRNA Count (total) 18
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ARNW00000000.1
Taxon History

CheckM Information

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Assessment of genome quality can also be examined using plots depicting key genomic characteristics (e.g., GC, coding density) which highlight sequences outside the expected distributions of a typical genome. CheckM also provides tools for identifying genome bins that are likely candidates for merging based on marker set compatibility, similarity in genomic characteristics, and proximity within a reference genome tree.

For more information, please check the CheckM Wiki page.

Rank Information

d__ = Domain
p__ = Phylum
c__ = Class
o__ = Order
f__ = Family
g__ = Genus
s__ = Species
st__ = Strain
x__ = No rank

The NCBI taxonomy is as described in the current RefSeq release used by GTDB, which may not be the latest RefSeq release available at the NCBI website.

NCBI Information

The information on this table has been parsed from the NCBI FTP website.

Go to the NCBI Page