Amycolatopsis orientalis_C
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Pseudonocardiaceae; g__Amycolatopsis; s__Amycolatopsis orientalis_C
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Pseudonocardiales; f__Pseudonocardiaceae; g__Amycolatopsis; s__Amycolatopsis orientalis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Pseudonocardiales; f__Pseudonocardiaceae; g__Amycolatopsis; s__Amycolatopsis orientalis; x__Amycolatopsis orientalis DSM 46075
NCBI Strain Identifiers DSM 46075
GTDB Type Material Designation not type material
GTDB Representative of Species True (6 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.51%
CheckM Contamination 0.12%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 5
tRNA Count 20
Contig Count 183
N50 Contigs 123,184 bp
Longest Contig 384,324 bp
Scaffold Count 183
N50 Scaffolds 123,184 bp
Longest Scaffold 384,324 bp
Genome Size 9,445,308 bp
Protein Count 8,946
Coding Density 89.16%
GC Percentage 69.42%
Ambiguous Bases 18
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name AO46075_01
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02204660
Country None
Date 2013-06-17
Genbank Assembly Accession GCA_000411995.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 8,879
Refseq Category na
Seq Rel Date 2013/06/17
Spanned Gaps 0
Species Taxid 31958
SSU Count 1
Submitter KRIBB
Taxid 1337958
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASXH00000000.1