Pedobacter heparinus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Sphingobacteriales; f__Sphingobacteriaceae; g__Pedobacter; s__Pedobacter heparinus
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Sphingobacteriia; o__Sphingobacteriales; f__Sphingobacteriaceae; g__Pedobacter; s__Pedobacter heparinus
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Sphingobacteriia; o__Sphingobacteriales; f__Sphingobacteriaceae; g__Pedobacter; s__Pedobacter heparinus; x__Pedobacter heparinus DSM 2366
NCBI Strain Identifiers DSM 2366
GTDB Type Material Designation type strain of species
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.48%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 6
23S Count 5
tRNA Count 20
Contig Count 3
N50 Contigs 2,927,691 bp
Longest Contig 2,927,691 bp
Scaffold Count 3
N50 Scaffolds 2,927,691 bp
Longest Scaffold 2,927,691 bp
Genome Size 5,171,533 bp
Protein Count 4,270
Coding Density 92.79%
GC Percentage 42.05%
Ambiguous Bases 0
GTDB representative GCF_000023825.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Pedobacter heparinus DSM 2366 HGAP Assembly
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01909281
Country None
Date 2013-6-13
Genbank Assembly Accession GCA_000410815.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 4,238
Refseq Category na
Seq Rel Date 2013/06/13
Spanned Gaps 0
Species Taxid 984
SSU Count 6
Submitter Pacific Biosciences
Taxid 485917
Total Gap Length 0
Translation Table 11
tRNA Count (total) 51
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master AQGK00000000.1