Lacticaseibacillus paracasei
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus paracasei
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paracasei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; x__Lactobacillus casei group; s__Lactobacillus paracasei; sb__Lactobacillus paracasei subsp. paracasei; x__Lactobacillus paracasei subsp. paracasei Lpp228
NCBI Strain Identifiers Lpp228
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000829035.1)
Genome Characteristics
CheckM Completeness 99.24%
CheckM Contamination 0.63%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 188
N50 Contigs 28,256 bp
Longest Contig 195,027 bp
Scaffold Count 188
N50 Scaffolds 28,256 bp
Longest Scaffold 195,027 bp
Genome Size 2,936,043 bp
Protein Count 3,046
Coding Density 85.12%
GC Percentage 46.21%
Ambiguous Bases 3
GTDB representative GCA_000829035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM40999v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02469720
Country None
Date 2013-06-11
Genbank Assembly Accession GCA_000409995.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source saliva
Latitude Longitude None
Molecule Count N/A
CDS Count 3,136
Refseq Category na
Seq Rel Date 2013/06/11
Spanned Gaps 0
Species Taxid 1597
SSU Count 2
Submitter Danone Research
Taxid 1256205
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ANKA00000000.1