Escherichia marmotae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia marmotae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia sp. KTE159
NCBI Strain Identifiers KTE159
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002900365.1)
Genome Characteristics
CheckM Completeness 99.7%
CheckM Contamination 0.19%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 3
23S Count 6
tRNA Count 18
Contig Count 48
N50 Contigs 192,611 bp
Longest Contig 423,393 bp
Scaffold Count 7
N50 Scaffolds 3,535,769 bp
Longest Scaffold 3,535,769 bp
Genome Size 4,809,500 bp
Protein Count 4,440
Coding Density 87.07%
GC Percentage 50.26%
Ambiguous Bases N/A
GTDB representative GCA_002900365.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KTE159_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00854684
Country Denmark
Date 2013-6-4
Genbank Assembly Accession GCA_000408805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,743
Refseq Category na
Seq Rel Date 2013/06/04
Spanned Gaps 41
Species Taxid 1182732
SSU Count 4
Submitter Broad Institute
Taxid 1182732
Total Gap Length 33234
Translation Table 11
tRNA Count (total) 68
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASVR00000000.1