Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KTE127
NCBI Strain Identifiers KTE127
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 6
23S Count 8
tRNA Count 20
Contig Count 74
N50 Contigs 208,129 bp
Longest Contig 375,520 bp
Scaffold Count 9
N50 Scaffolds 1,482,759 bp
Longest Scaffold 2,069,533 bp
Genome Size 5,322,418 bp
Protein Count 4,876
Coding Density 85.81%
GC Percentage 50.74%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KTE127_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00854666
Country Denmark
Date 2013-6-4
Genbank Assembly Accession GCA_000408705.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,309
Refseq Category na
Seq Rel Date 2013/06/04
Spanned Gaps 65
Species Taxid 562
SSU Count 5
Submitter Broad Institute
Taxid 1182714
Total Gap Length 123744
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASVM00000000.1