Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KTE108
NCBI Strain Identifiers KTE108
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.89%
CheckM Contamination 0.93%
CheckM Strain Heterogeneity 11.11
5S Count 8
16S Count 6
23S Count 8
tRNA Count 20
Contig Count 86
N50 Contigs 121,418 bp
Longest Contig 303,332 bp
Scaffold Count 7
N50 Scaffolds 4,655,209 bp
Longest Scaffold 4,655,209 bp
Genome Size 5,254,807 bp
Protein Count 4,930
Coding Density 85.53%
GC Percentage 50.77%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KTE108_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00854656
Country Denmark
Date 2013-6-4
Genbank Assembly Accession GCA_000408645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,321
Refseq Category na
Seq Rel Date 2013/06/04
Spanned Gaps 79
Species Taxid 562
SSU Count 5
Submitter Broad Institute
Taxid 1182704
Total Gap Length 116561
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASVJ00000000.1