Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KTE100
NCBI Strain Identifiers KTE100
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.79%
CheckM Strain Heterogeneity 12.5
5S Count 6
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 66
N50 Contigs 188,342 bp
Longest Contig 596,362 bp
Scaffold Count 5
N50 Scaffolds 5,176,203 bp
Longest Scaffold 5,176,203 bp
Genome Size 5,290,842 bp
Protein Count 4,996
Coding Density 86.17%
GC Percentage 50.89%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KTE100_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00854651
Country Denmark
Date 2013-6-4
Genbank Assembly Accession GCA_000408565.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,369
Refseq Category na
Seq Rel Date 2013/06/04
Spanned Gaps 61
Species Taxid 562
SSU Count 7
Submitter Broad Institute
Taxid 1182699
Total Gap Length 95150
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASVF00000000.1