Escherichia coli_D
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KTE199
NCBI Strain Identifiers KTE199
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 2
23S Count 6
tRNA Count 19
Contig Count 65
N50 Contigs 238,025 bp
Longest Contig 413,186 bp
Scaffold Count 13
N50 Scaffolds 1,305,671 bp
Longest Scaffold 2,254,039 bp
Genome Size 5,429,149 bp
Protein Count 5,052
Coding Density 86.02%
GC Percentage 50.57%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KTE199_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00974054
Country None
Date 2013-6-4
Genbank Assembly Accession GCA_000408165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,507
Refseq Category na
Seq Rel Date 2013/06/04
Spanned Gaps 52
Species Taxid 562
SSU Count 3
Submitter Broad Institute
Taxid 1181745
Total Gap Length 85519
Translation Table 11
tRNA Count (total) 74
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASUL00000000.1