Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KTE198
NCBI Strain Identifiers KTE198
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 3
23S Count 5
tRNA Count 19
Contig Count 108
N50 Contigs 120,263 bp
Longest Contig 289,371 bp
Scaffold Count 16
N50 Scaffolds 1,354,907 bp
Longest Scaffold 2,346,168 bp
Genome Size 5,356,246 bp
Protein Count 4,995
Coding Density 85.26%
GC Percentage 50.70%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KTE198_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00974053
Country None
Date 2013-6-4
Genbank Assembly Accession GCA_000408145.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,393
Refseq Category na
Seq Rel Date 2013/06/04
Spanned Gaps 92
Species Taxid 562
SSU Count 4
Submitter Broad Institute
Taxid 1181744
Total Gap Length 143796
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASUK00000000.1