Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KTE182
NCBI Strain Identifiers KTE182
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.12%
CheckM Strain Heterogeneity 0.0
5S Count 8
16S Count 9
23S Count 9
tRNA Count 20
Contig Count 76
N50 Contigs 261,739 bp
Longest Contig 542,948 bp
Scaffold Count 20
N50 Scaffolds 931,891 bp
Longest Scaffold 1,555,886 bp
Genome Size 5,625,543 bp
Protein Count 5,289
Coding Density 85.99%
GC Percentage 50.67%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KTE182_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00974037
Country None
Date 2013-06-04
Genbank Assembly Accession GCA_000408065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,501
Refseq Category na
Seq Rel Date 2013/06/04
Spanned Gaps 56
Species Taxid 562
SSU Count 11
Submitter Broad Institute
Taxid 1181728
Total Gap Length 96279
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASUG00000000.1