Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KTE36
NCBI Strain Identifiers KTE36
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.1%
CheckM Strain Heterogeneity 50.0
5S Count 7
16S Count 5
23S Count 9
tRNA Count 20
Contig Count 48
N50 Contigs 202,058 bp
Longest Contig 408,077 bp
Scaffold Count 18
N50 Scaffolds 600,093 bp
Longest Scaffold 1,090,172 bp
Genome Size 5,318,624 bp
Protein Count 5,087
Coding Density 86.95%
GC Percentage 50.59%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KTE36_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00847671
Country None
Date 2013-6-4
Genbank Assembly Accession GCA_000407965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,457
Refseq Category na
Seq Rel Date 2013/06/04
Spanned Gaps 30
Species Taxid 562
SSU Count 4
Submitter Broad Institute
Taxid 1169353
Total Gap Length 49492
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASUB00000000.1