Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli KTE3
NCBI Strain Identifiers KTE3
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.39%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 3
23S Count 6
tRNA Count 19
Contig Count 58
N50 Contigs 279,825 bp
Longest Contig 442,029 bp
Scaffold Count 8
N50 Scaffolds 3,020,226 bp
Longest Scaffold 3,020,226 bp
Genome Size 5,171,582 bp
Protein Count 4,854
Coding Density 86.78%
GC Percentage 50.63%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Esch_coli_KTE3_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00847634
Country None
Date 2013-06-04
Genbank Assembly Accession GCA_000407685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,323
Refseq Category na
Seq Rel Date 2013/06/04
Spanned Gaps 50
Species Taxid 562
SSU Count 2
Submitter Broad Institute
Taxid 1169316
Total Gap Length 46961
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASTO00000000.1