Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Lachnospirales; f__Lachnospiraceae; g__COE1; s__COE1 sp000403335
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Lachnospiraceae; x__unclassified Lachnospiraceae; s__Lachnospiraceae bacterium COE1
NCBI Strain Identifiers COE1
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.16%
CheckM Contamination 1.91%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 5
23S Count 7
tRNA Count 20
Contig Count 105
N50 Contigs 153,052 bp
Longest Contig 462,930 bp
Scaffold Count 19
N50 Scaffolds 950,646 bp
Longest Scaffold 1,322,351 bp
Genome Size 4,967,607 bp
Protein Count 4,674
Coding Density 84.85%
GC Percentage 44.08%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Lach_bact_COE1_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01730993
Country USA: Birmingham; AL
Date 2013-6-14
Genbank Assembly Accession GCA_000403335.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Ceca
Latitude Longitude None
Molecule Count N/A
CDS Count 4,592
Refseq Category na
Seq Rel Date 2013/06/14
Spanned Gaps 86
Species Taxid 1235793
SSU Count 5
Submitter Broad Institute
Taxid 1235793
Total Gap Length 121860
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASSW00000000.1