Phocaeicola vulgatus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Phocaeicola; s__Phocaeicola vulgatus
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides vulgatus
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Bacteroides; s__Bacteroides vulgatus; x__Bacteroides vulgatus dnLKV7
NCBI Strain Identifiers dnLKV7
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000012825.1)
Genome Characteristics
CheckM Completeness 99.25%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 3
23S Count 6
tRNA Count 20
Contig Count 36
N50 Contigs 219,849 bp
Longest Contig 336,043 bp
Scaffold Count 17
N50 Scaffolds 422,052 bp
Longest Scaffold 1,241,262 bp
Genome Size 5,128,730 bp
Protein Count 4,252
Coding Density 89.10%
GC Percentage 42.41%
Ambiguous Bases N/A
GTDB representative GCA_000012825.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Bact_vulg_dnLKV7_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01730984
Country USA: St. Louis; MO
Date 2013-6-14
Genbank Assembly Accession GCA_000403235.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Feces
Latitude Longitude None
Molecule Count N/A
CDS Count 4,282
Refseq Category na
Seq Rel Date 2013/06/14
Spanned Gaps 19
Species Taxid 821
SSU Count 3
Submitter Broad Institute
Taxid 1235786
Total Gap Length 17036
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ASSN00000000.1