Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio jasicida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio jasicida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio jasicida; x__Vibrio jasicida 090810c
NCBI Strain Identifiers 090810c
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000400365.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.35%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 4
23S Count 2
tRNA Count 20
Contig Count 169
N50 Contigs 158,060 bp
Longest Contig 356,025 bp
Scaffold Count 168
N50 Scaffolds 158,060 bp
Longest Scaffold 356,025 bp
Genome Size 5,954,450 bp
Protein Count 5,337
Coding Density 86.85%
GC Percentage 45.07%
Ambiguous Bases N/A
GTDB representative GCA_000400365.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM40028v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00036656
Country None
Date 2013-05-15
Genbank Assembly Accession GCA_000400285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,370
Refseq Category na
Seq Rel Date 2013/05/15
Spanned Gaps 1
Species Taxid 766224
SSU Count 10
Submitter University of Miyazaki
Taxid 1280002
Total Gap Length 10
Translation Table 11
tRNA Count (total) 120
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BAOC00000000.1