Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli TOP2396-2
NCBI Strain Identifiers TOP2396-2
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.79%
CheckM Contamination 0.27%
CheckM Strain Heterogeneity 25.0
5S Count 4
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 179
N50 Contigs 64,342 bp
Longest Contig 195,399 bp
Scaffold Count 179
N50 Scaffolds 64,342 bp
Longest Scaffold 195,399 bp
Genome Size 4,736,152 bp
Protein Count 4,559
Coding Density 88.53%
GC Percentage 50.59%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Ec72_E1F2_TOP2396-2_120714
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01894024
Country USA: Seattle; WA
Date 2013-05-16
Genbank Assembly Accession GCA_000397545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces from female
Latitude Longitude None
Molecule Count N/A
CDS Count 4,820
Refseq Category na
Seq Rel Date 2013/05/16
Spanned Gaps 0
Species Taxid 562
SSU Count 5
Submitter National University of Singapore, Genome Institute of Singapore
Taxid 1286345
Total Gap Length 0
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOQR00000000.1