Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli TOP382-1
NCBI Strain Identifiers TOP382-1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 1.66%
CheckM Strain Heterogeneity 76.92
5S Count 6
16S Count 3
23S Count 3
tRNA Count 20
Contig Count 118
N50 Contigs 110,096 bp
Longest Contig 316,382 bp
Scaffold Count 118
N50 Scaffolds 110,096 bp
Longest Scaffold 316,382 bp
Genome Size 4,949,220 bp
Protein Count 4,613
Coding Density 88.09%
GC Percentage 50.56%
Ambiguous Bases N/A
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Ec13_E1F1_TOP382-1_120714
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01894009
Country USA: Seattle; WA
Date 2013-05-16
Genbank Assembly Accession GCA_000397245.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces from a female
Latitude Longitude None
Molecule Count N/A
CDS Count 4,736
Refseq Category na
Seq Rel Date 2013/05/16
Spanned Gaps 0
Species Taxid 562
SSU Count 4
Submitter National University of Singapore, Genome Institute of Singapore
Taxid 1286330
Total Gap Length 0
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AOQC00000000.1